In the template's .psd file the company name & the logo are for reference so when you customize the template to make it fulfill your company needs you must change the "company name" with your company name (in our example "Com Masters Inc.") and also to change or to add your specific logo.

Open the index.psd file located in template/psd (Note: if the opened file has the slices visible just press Ctrl+H to hide them):

To change the company name select the text and write your company name (Using the Horizontal Type Tool, shortcut "T")

Drag and drop the logo to your main layout and place it near the company name

Now you have your logo and company name changed.